FastQCFastQC Report
Wed 31 May 2023
EGAF00007941029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534274
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21230.3973616533838442No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19060.35674578961356906No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14990.28056764880941243No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13290.24874876935804474No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12140.22722423325859017No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11930.22329366579695062No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11880.22235781640132218No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11260.21075328389552925No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9980.18679553936744067No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8110.15179477197093627No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7910.14805137438842242No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7410.13869288043213782No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6030.11286343711279231No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6020.11267626723366662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)