FastQCFastQC Report
Wed 31 May 2023
EGAF00007941035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473150
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42530.8988692803550672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30140.6370072915565888No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22120.46750501954982565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17030.3599281411814435No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15830.3345662052203318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14010.29610060234597907No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12320.2603825425340801No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11580.24474268202472788No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11390.24072704216421856No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8810.1861988798478284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8620.18218323998731903No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8310.1756314065306985No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8000.16907957307407798No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7990.1688682236077354No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7610.16083694388671668No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7570.1599915460213463No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7360.15555320722815175No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7060.14921272323787382No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6630.14012469618514212No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6230.13167071753143822No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6060.12807777660361408No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5920.12511888407481772No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5610.1185670506181972No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5450.11518545915671563No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5340.11286061502694705No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4820.10187044277713199No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4740.10017964704639121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)