FastQCFastQC Report
Sun 21 May 2023
EGAF00007941038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508520
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17090.3360733107842366No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13750.2703925116022969No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12390.24364823409108788No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10500.20648155431448123No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8740.17187131282938725No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6610.12998505466844962No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6540.12860851097301973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)