FastQCFastQC Report
Wed 31 May 2023
EGAF00007941041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45230.9222613039710454No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29490.6013151858082276No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26960.5497272773614722No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22740.4636794616913902No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12710.25916297089259316No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12620.25732782790436864No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12150.2477443034103074No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12100.24672477952796043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11890.2424427792221033No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11540.23530611204567467No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10840.22103277769281743No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10370.2114492531987562No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9780.19941887138706224No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9330.19024315644593975No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8730.17800886985777642No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8580.1749502982107356No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7360.15007391548147014No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6950.1417138196462252No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6900.14069429576387826No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6830.13926696232859254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6680.13620839068155172No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6260.12764439006983738No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6160.1256053423051435No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6050.12336238976398022No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5910.12050772289340878No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.11235153183463323No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5350.109089055411123No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5290.10786562675230667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)