FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482061
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20600.4273318107044544No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG14020.29083456243089567No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13180.2734093818002286No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT13000.26967541452222854No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12850.2665637751238951No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12360.2563990864226727No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT11860.24602695509489464No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10680.2215487251613385No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10620.22030406940200514No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10010.20765006918211595No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA9850.20433098715722697No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9630.19976724937300466No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9380.19458118370911565No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG9240.1916769869373378No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8630.17902298671744862No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8590.17819321621122639No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC8150.16906574064278174No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8070.16740619963033723No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG8070.16740619963033723No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7830.16242757659300378No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7620.15807128143533702No Hit
GGTAGTGTTGTCGCCGGTGATACCGGACGTAGAGCTGCTGCCGA7500.1555819699166703No Hit
CAGGAAACCACGTTCTGCGGACATCTGCAGGCTACGCAGTGCCG7130.14790659273411455No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6950.14417262545611448No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6890.1429279696967811No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6780.14064610080466994No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT6590.1367046909001143No Hit
TGGTTCAACACGGGACACCATGTCGCAGTTATCCGGGGTCAGCA6550.13587492039389207No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6210.12882187109100302No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG6030.12508790381300292No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC5690.11803485451011386No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5580.11575298561800271No Hit
GCTGTCGGTTTCCAGGATAGTCAGCAGCGGCTCGCGAATTTTCG5540.11492321511178046No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5450.11305623147278042No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5380.11160413308689149No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5330.11056691995411369No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC5310.11015203470100257No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5080.10538085429022469No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT4870.10102455913255791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)