FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482061
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45630.946560704973022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20200.41903410564223204No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15150.314275579231674No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14300.2966429559744514No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13700.2841963983811177No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13610.2823294147421177No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG13110.27195728341433967No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12920.26801587350978406No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12020.2493460371197836No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11920.247271610854228No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC11520.23897390579200556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11350.23544738114056105No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11290.23420272538122766No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10880.2256975776924497No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA10180.21117659383356047No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC9890.20516075766344924No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9780.20287888877133808No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9770.2026714461447825No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9750.2022565608916714No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8640.17923042934400418No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8580.17798577358467083No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8460.17549646206600408No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8090.16782108488344838No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC7800.1618052487133371No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA7640.15848616668844814No Hit
GGCATTGACGAGAACGTCTGCACTATGAAAC7220.14977357637311461No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6930.14375774020300336No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6740.13981633029844773No Hit
AAAGAAGTAGTCTGTGCGAGCTCCAGCGACA6670.13836423191255878No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6520.1352525925142254No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6300.13068885473000305No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC5940.12322092017400287No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5710.118449739763225No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5710.118449739763225No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA5700.11824229713666944No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5540.11492321511178046No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5400.11201901834000261No Hit
CGTAAACTGCACGAATGGGAAAGCCGTACCA5380.11160413308689149No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG5300.10994459207444701No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5160.10704039530266915No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4970.1030989853981135No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG4950.1026841001450024No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4860.10081711650600236No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4860.10081711650600236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)