FastQCFastQC Report
Sun 21 May 2023
EGAF00007941044

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941044
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514117
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25600.49794113013185715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22100.4298632412466423No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18440.35867322029810333No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16950.32969149045839763No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15840.3081010742690866No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13250.2577234364940276No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG13160.2559728622084078No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT12630.2456639247486467No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11090.21570965363915218No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT10930.21259752157582806No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10820.21045793078229275No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC10290.20014899332253164No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9150.17797505237134736No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8090.15735717745182518No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8050.15657914443599413No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8020.15599561967412087No Hit
CGGGCTCGGTGGGTGACGATGGTGGGTGGAAACGCCACGACGAC7980.15521758665828983No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7920.1540505371345433No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7520.14627020697623305No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG7220.14043495935750033No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7050.13712831904021847No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7020.1365447942783452No Hit
GGTGGTACGGGTGGAAGAGGAGCGCGCGCTCGGCAGGCTGACGG6860.1334326622150211No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6650.1293479888819082No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6290.12234569173942896No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5750.11184224602571011No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5730.11145322951779457No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC5720.11125872126383682No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5580.10853560570842824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)