FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941045

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941045
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514117
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55991.0890517139094797No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47640.9266373218547529No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36730.7144288167868403No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17930.34875329934625776No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16440.319771569506552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16390.3187990282367632No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16160.3143253383957348No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14340.2789248361754231No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14190.27600721236605674No Hit
GCACTGGGCCAGCGTCGTGCCGATGCAGTTA12730.24760900728822427No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12060.2345769542730546No Hit
GCGCTGGGCCAGCGTCGCGCTGACGCAGTTA10570.20559522443334882No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC10200.19839841903691183No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9450.18381029999008008No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8320.16183086729285356No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7840.15249447110288125No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7820.15210545459496574No Hit
GCGGACGAAGAGGAAGAGGAACTGCTGGCGC7700.14977135554747267No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA7450.14490864919852875No Hit
TCCGAACCAGAAATCACTGAACACCGTGACC7210.14024045110354258No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7170.13946241808771154No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT7160.13926790983375378No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6320.12292921650130223No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC6170.12001159269193588No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5870.11417634507320318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)