FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490534
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21230.43279364936987036No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12960.2642018697990353No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12330.2513587233504711No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12320.2511548638830336No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12150.2476892529365956No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10730.21874120856046675No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10540.21486787867915375No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9460.1928510561959008No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8470.1726689689195856No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7560.15411775738277061No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7400.15085600590377019No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6510.13271251330183026No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6430.13108163756233002No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5940.1210925236578912No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5710.11640375590682807No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5690.11599603697195301No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5600.11416130176501527No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5450.11110340975345236No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4910.10009499851182588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)