FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422005
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36960.8758190068838048No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22740.5388561746898733No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15320.3630288740654732No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.3087641141692634No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12330.2921766329782822No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11950.2831720003317496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10950.25947559863034797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8810.20876529898934845No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8670.20544780275115224No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8480.20094548642788593No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8430.19976066634281586No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7590.17985568891363848No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7030.16658570396085354No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6640.1573441072973069No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT6200.1469176905486902No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6010.14241537422542386No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5730.1357803817490314No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5630.13341074157889124No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5370.12724967713652682No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4850.11492754825179798No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4800.11374272816672788No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4600.10900344782644755No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4520.10710773569033542No Hit

[OK]Adapter Content

Adapter graph