FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454808
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12590.27682010870521184No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11360.24977572953861849No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8220.18073560711333134No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8060.17721763909166063No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8010.17611827408488856No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7480.16446500501310443No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6600.14511618089391567No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5910.12994494380046084No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5720.12576735677472692No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5040.11081599268262651No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4920.1081775166663735No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4830.10619865965418374No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4800.10553904065012049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)