FastQCFastQC Report
Sun 21 May 2023
EGAF00007941051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454808
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42620.9370987317725282No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16230.35685388119821987No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12400.27264252167947794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11220.24669750751965666No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8810.193708114193242No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8450.18579268614448294No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8200.1802958611106225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8160.17941636910520484No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7220.15874830697788958No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT7040.15479059295351005No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5860.12884557879368877No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5160.11345446869887951No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4870.10707815165960141No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4670.10268069163251307No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4590.10092170762167772No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4580.10070183462032331No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)