FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490333
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10100.20598246497788236No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9640.19660108538483032No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.18538421848009412No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7320.14928630135030682No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6860.13990492175725477No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA5120.10441883373136217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)