FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474106
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8020.1691604830987163No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7160.1510210796741657No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6540.13794383534483848No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6070.12803044045002593No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5940.1252884376067799No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5860.12360105124170544No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5680.11980443192028786No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5540.11685150578140753No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5310.1120002699818184No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5270.11115657679928118No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4920.10377426145208032No Hit
CTGGCAGCCGTAGAAGACACCGTTTTCGGTCTGGCCGTTAATCT4770.10061041201756568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)