FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474106
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43740.9225784951044704No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15000.31638494345146445No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8430.17780833821972303No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7950.16768402002927615No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7450.15713785524756066No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6770.14279507114442763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6450.13604552568412973No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6440.1358346023884954No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6320.13330352284088368No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6020.1269758239718544No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5810.1225464347635339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.12170274158099666No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5570.11748427566831046No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5180.10925826713857238No Hit
GGTTATATCCGTCAGGCCACCGGTTACACTC5090.10735995747786362No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4890.1031414915651774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)