FastQCFastQC Report
Wed 31 May 2023
EGAF00007941061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398053
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38390.9644444332789855No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG14830.37256345260555757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12780.3210627730478102No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10420.26177418584962303No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10150.25499116951762707No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8610.2163028541425388No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7700.1934415768754412No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6090.15299470171057625No Hit
ATGATCATCAACCACAACACCAGCGCAATCA5110.1283748646537019No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4930.12385285376570457No Hit
ATGGTGGTCCAGCACAATCTGCAGGCCATGA4850.12184307114881687No Hit
ATGGTGGTTCAGCACAACCTGACTGCGATGA4760.11958206570481819No Hit
ATGGTTGTCCAGCACAACATGCAGGCTGCGA4210.10576481021371527No Hit
GTCGTTCAGCACAATATGTCTGCCATGAACG4150.10425747325104949No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4050.10174524497993985No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)