FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513713
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22890.44557953565512265No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18490.35992859826401125No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13130.2555901836239301No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12550.24429983278601083No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG11550.22483371065166735No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11420.22230311477420273No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10660.20750886195210166No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9700.18882138470313192No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6660.12964437341472768No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5630.10959426761635387No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5610.10920494517366701No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5300.10317044731202052No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5250.10219714120530336No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5230.10180781876261648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)