FastQCFastQC Report
Wed 31 May 2023
EGAF00007941065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513713
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46300.9012814548201038No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26790.5214974119790623No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23440.4562859028290115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22890.44557953565512265No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18070.351752826967587No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13380.2604567141575159No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT11240.21879921279002087No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10640.2071195395094148No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8520.16585136058460656No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6000.11679673280606097No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5410.1053117207467983No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5240.1020024799839599No Hit
GCGCAGATCAAAGCAGGTGGCACCGCTGCGG5190.10102917387724274No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)