FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493854
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25220.510677244691751No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23410.47402673664686323No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22990.46552219886849155No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19510.39505602870483986No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19000.3847290899739599No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17300.35030596087102667No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16580.3357267532509608No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16350.3310695063723287No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16210.32823466044620475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14640.2964438882746723No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13840.2802447686968213No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13350.27032280795538766No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13000.26323569314007783No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG12760.2583759572667225No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12340.24987141948835082No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11040.223547850174343No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10910.22091549324294224No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10460.2118034884804011No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10240.20734873059649206No Hit
CATCGCCTCAGCGTAAGCGCTGGAGAAGGTTGCGTAGGACGGAG9300.1883147650925172No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7860.15915634985238553No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7280.14741198815844359No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT7120.1441721642428734No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6970.14113482932202634No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6940.14052736233785693No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6720.13607260445394792No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6470.1310103795858695No Hit
GCGGCTCGGACCCGGCGGAGAGTGGGAAGAGCTGCAAGAGGTGA6430.13020042360697698No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6400.12959295662280754No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6390.1293904676280844No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6380.12918797863336126No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6170.12493570974417541No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5490.1111664581030021No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5430.10995152413466329No Hit
TTCGCGGTCACGGCCGTTAGCGCCATTAACTTCGTAGTTAATCA5060.10245943132990722No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5010.10144698635629154No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4980.10083951937212211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)