FastQCFastQC Report
Sun 21 May 2023
EGAF00007941067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493854
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA52751.0681294471645466No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44630.9037083834493596No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35250.7137737063990572No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30710.6218437027947531No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25870.5238390293487549No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22820.46207988595819816No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19350.3918162047892697No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18770.38007184309532777No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17820.3608353885966298No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17490.3541532517707663No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15380.3114280738841844No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC13550.27437258784985036No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13210.26748796202926367No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12970.2626282261559085No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11950.24197434869414847No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11850.23994945874691712No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10550.21362588943290933No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8140.16482604170463336No Hit
GATAACGTGGCGACCTATGCTGCCGCCATCG8040.16280115175740198No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7990.16178870678378632No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7700.15591652593681535No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7560.15308168001069142No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7510.15206923503707573No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7120.1441721642428734No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6960.1409323403273032No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6870.139109939374795No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6790.13749002741700989No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6610.13384522551199343No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.13384522551199343No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC6380.12918797863336126No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6350.12858051164919188No Hit
GCGGCCGCCGGCGTGACCGTAATCTCCGTTG5840.11825357291831189No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5550.11238139207134092No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5000.10124449736156839No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4950.10023205238795271No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)