FastQCFastQC Report
Wed 31 May 2023
EGAF00007941068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455054
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC15750.3461127690340048No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13720.3015026788029553No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11630.2555740637374905No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10810.23755422433381534No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8450.1856922475134819No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7740.17008970363956805No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7180.15778347185169234No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7080.15558593046100022No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6980.15338838907030813No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6660.14635625662009344No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5180.11383264403785046No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5170.11361288989878125No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4780.10504247847508208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)