FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494951
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20980.4238803437107916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14840.2998276597077286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12740.2573992172962576No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11930.24103396093754734No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11730.23699315689835965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11350.22931562922390297No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11340.22911358902194362No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10600.21416261407694903No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10170.20547488539269543No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9930.2006259205456702No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9930.2006259205456702No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9170.18527086519675684No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8900.17981577974385343No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8370.169107649040006No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8210.1658750058086558No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7630.15415667409501144No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7470.15092403086366127No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7040.14223630217940766No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6960.14061998056373257No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6890.13920569915001688No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6800.1373873373323824No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6650.1343567343029916No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6620.13375061369711344No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6250.12627512622461617No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.11738535733840319No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5730.1157690357227281No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5610.11334455329921549No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5540.11193027188549978No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5500.11112211107766223No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC5370.10849558845219022No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5260.10627314623063698No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5250.10607110602867757No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5110.10324254320124618No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)