FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513941
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16610.32318884852541435No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15170.29517006815957475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12220.23777048338233375No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11470.22317736860845896No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7330.14262337505666994No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7330.14262337505666994No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6210.12083099032768353No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5240.1019572285534721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)