FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511961
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16810.328345323178914No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15180.2965069604911311No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14120.27580225837514966No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG13670.2670125263447802No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12540.24494053257963008No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12200.2382994017122398No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9990.19513205107420292No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT7650.14942544451628154No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7540.1472768433533023No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6170.12051699250528848No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6170.12051699250528848No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6130.11973568299147787No Hit
TTGTTCGGCGGCGACCTGCTGTTCGCGAGCACGTTCAGCGTTGT5690.11114127833956103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)