FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459301
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20040.43631518328938973No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19690.42869490813213995No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18110.39429480885084073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13380.29131223315429317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12630.27498307210304357No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10710.2331804198118445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10410.22664875539134466No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10160.22120570170759482No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8340.18158027088989573No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6800.14805106019799652No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6650.1447852279877466No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6340.13803584141989675No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.1315041769993969No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.127149734052397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.11756995956899723No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4810.10472435287534755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)