FastQCFastQC Report
Sun 21 May 2023
EGAF00007941091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436064
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35830.8216683789535482No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18300.4196631687091803No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17570.4029225067879944No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15860.36370807954795625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13110.3006439421736259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10960.25133925295369486No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9730.2231323842371762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9190.2107488808982168No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7740.17749688119175167No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6310.14470352975709988No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6270.14378623321347325No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6160.14126366771850005No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5980.13713583327218024No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5850.1341546195053937No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5220.11970719894327439No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4810.11030490937110149No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4430.10159059220664855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)