FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440988
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19040.43175778025705913No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16800.3809627472856404No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9950.22562972235072157No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9740.22086768800965106No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6680.15147804475405227No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5620.12744110950864876No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5170.11723675020635482No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4630.10499151904360209No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4620.1047647555035511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)