FastQCFastQC Report
Wed 31 May 2023
EGAF00007941095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547642
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA67471.232009232308698No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36410.6648503949660545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32620.5956445999393765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA31070.5673414383849303No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT25050.4574156109283072No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24770.4523027817442782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20600.3761581471107037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17640.32210823859382587No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15720.28704883847477003No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14750.2693365373729553No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13640.2490678216791261No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13090.23902476435335493No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13080.2388421633110682No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12470.22770349973157644No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11710.21382582051778354No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11090.20250455589600505No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11000.20086114651542433No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10560.19282670065480734No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10130.1849748558364771No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9490.17328838913012515No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9380.1712797776649709No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG8960.16361053388892743No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7690.14042020151851028No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7490.1367681806727753No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6670.12179489520526184No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6600.12051668790925459No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6500.11869067748638709No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6150.11229964100635086No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.11083883266805687No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6010.10974322641433638No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5780.10554340244174112No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5540.10116097742685914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)