FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483377
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22370.46278577590576303No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC20580.4257546387188468No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19450.4023774403829723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18210.3767245855719242No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14670.30348982264360946No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG12580.26025234961531063No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11390.2356338841111596No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10940.2263243803490857No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9350.19343080038975788No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9350.19343080038975788No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7530.1557790296187034No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7460.15433088458904748No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7440.15391712886628864No Hit
GGACGCAGAACGACCGGTCACGACGCTAGAGCGGTGTTTAGCGC7130.1475039151635266No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7100.14688328157938835No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7000.14481450296559414No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6870.14212509076766167No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6750.13964255643110862No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6170.12764364047110227No Hit
CGCAACACCTACGCTCTGCAGCAGTTGAGCATGTGCAGACTGGG6090.12598861758006688No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5910.12226481607523734No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5800.1199891596000637No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5640.116679113817993No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5390.11150716728350749No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5260.10881775508557502No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5250.1086108772241956No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4990.10323205282833069No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4920.10178390779867474No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4850.10033576276901882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)