FastQCFastQC Report
Wed 31 May 2023
EGAF00007941101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483377
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23730.4909211650533642No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23440.4849217070733609No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG20840.43113346311471173No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17840.36907010470088564No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16510.3415553491374228No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14650.3030760669208506No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13380.2768025785256642No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12550.25963171603117235No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC12040.2490809451008219No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11900.24618465504151005No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10960.22673813607184454No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10470.21660112086425298No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8450.17481179286561008No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8380.17336364783595412No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7870.1628128769056037No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7710.15950283112353297No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7700.15929595326215357No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7380.15267586169801212No Hit
CTGGGTGAGGCAGAATCCTTCACCATGGCCA7180.1485383044704237No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7180.1485383044704237No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7030.1454351365497324No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6470.13384997631248485No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6270.12971241908489647No Hit
GCGACCGGCCTGGAAGACCAGGCAGAACGTA6080.12578173971868747No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6040.1249542282731698No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5800.1199891596000637No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5460.11295531231316344No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5350.1106796558379898No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5160.10674897647178082No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5130.10612834288764256No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4840.10012888490763938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)