FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425985
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53111.246757514935972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27220.6389896357852977No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12170.2856908107092973No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10980.2577555547730554No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9130.21432679554444406No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9070.21291829524513775No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9040.21221404509548458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7520.17653203751305796No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG6930.16268178456987922No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6920.16244703451999484No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6820.16009953402115099No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG6460.1516485322253131No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5900.1385025294317875No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5830.13685927908259682No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5810.13638977898282803No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5410.1269997769874526No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5340.1253565266382619No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5270.12371327628907121No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5060.11878352524149911No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4800.11268002394450509No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4790.1124452738946207No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4630.10868927309647053No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4530.10634177259762669No Hit

[OK]Adapter Content

Adapter graph