FastQCFastQC Report
Wed 31 May 2023
EGAF00007941105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438801
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35810.8160874747322818No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18010.4104366216120747No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17510.39904193472667565No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13580.30947969580743895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11520.2625335858395947No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9790.22310796921611392No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9470.21581536960945852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8870.20214174534697962No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7720.17593396551056173No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.17456660308431385No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7150.1629440224612068No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6880.15679089154309128No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.15428406042830348No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6330.14425673596915228No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5720.13035521796896543No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.12306261836231003No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5350.12192314967377012No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5260.11987210603439828No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4880.11121214400149498No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4790.10916110036212315No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG4520.10300796944400765No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4410.10050113832921984No Hit

[OK]Adapter Content

Adapter graph