FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452703
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36250.8007457427938406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13900.3070445744781899No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13510.2984296547626148No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8720.19262076902516662No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8490.18754017534675052No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7400.16346257921860471No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7340.16213720695467007No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6320.1396058784677813No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6020.13297901714810814No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.11597007309428035No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4900.10823873488799501No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4860.10735515337870524No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4770.10536709498280329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)