FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492574
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42470.8622054757254747No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23590.4789128131001636No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10370.21052674318985573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8940.181495572238892No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8160.1656603880838209No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7240.146982991388096No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6990.14190761185121423No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6360.1291176554182722No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6250.1268844884220442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)