FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455316
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA11110.24400636041781973No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10920.23983343436206941No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10820.2376371574906219No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9800.21523513340185718No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG9100.19986119530172453No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8240.18097321420727583No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7050.1548375194370503No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6420.1410009751469309No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG5670.12452889861107451No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5480.12035597255532421No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAG5110.1122297481309684No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4910.10783719438807333No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4810.10564091751662581No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4600.10102873608658601No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)