FastQCFastQC Report
Wed 31 May 2023
EGAF00007941111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455316
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21850.4798864964112836No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG11370.2497166802835833No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10740.23588013599346389No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10120.22226321939048926No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA9250.20315561060889578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6790.14912719957128676No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6330.13902432596262815No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6230.13682804909118063No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG5420.1190382064324557No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5370.11794006799673194No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5210.1144260250024159No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5000.10981384357237611No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACCAG4940.1084960774495076No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4940.1084960774495076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)