FastQCFastQC Report
Wed 31 May 2023
EGAF00007941112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511239
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGC8970.1754560978329118No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8070.15785180708044574No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7700.15061448754887635No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6400.12518606757309206No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6010.11755754158035675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)