FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511239
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23500.4596675918699473No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9840.192473578893629No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAATG9320.18230221090331528No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8090.15824301354161166No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7640.1494408681653786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7190.14063872278914558No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6020.1177531448109397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)