FastQCFastQC Report
Wed 31 May 2023
EGAF00007941114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463650
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA28810.6213738811603581No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT18640.4020273913512348No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG17260.37226356087566054No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15970.3444408497789281No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10720.23120888601315648No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9340.2014450555375822No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8360.18030842230130487No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG7460.16089722851288688No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6210.13393723714008413No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5100.10999676480103528No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5050.10891836514612316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)