FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463650
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA28500.6146878032999029No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24410.5264747115280923No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC18720.40375283079909413No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17170.3703224414968187No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG17090.36859700204895934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8490.18311226140407635No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC7720.16650490671842985No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7020.1514073115496603No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5470.11797692224738487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.11409468348970127No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5270.11366332362773644No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5180.11172220424889463No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5170.11150652431791222No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5100.10999676480103528No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4720.10180092742370322No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT4650.10029116790682628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)