FastQCFastQC Report
Sun 21 May 2023
EGAF00007941116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449885
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14190.31541393911777454No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13700.30452226680151595No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13340.2965202218344688No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9300.20671949498205097No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8880.1973837758538293No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7720.17159940873778856No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7060.1569289929648688No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6880.15292797048134524No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6200.13781299665470065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6060.13470109027862676No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5980.1329228580637274No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5740.1275881614190293No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5630.1251430921235427No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5600.12447625504295542No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG5550.12336485990864332No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5260.11691876812963313No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5130.11402914078042167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)