FastQCFastQC Report
Wed 31 May 2023
EGAF00007941117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449885
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29590.6577236404859019No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.4721206530557809No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15040.3343076564010803No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13130.291852362270358No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12800.2845171543838981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11600.2578436711604077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9180.20405214665970192No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9150.20338530957911466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7800.1733776409526879No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA6390.14203629816508664No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6350.14114718205763696No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5810.12914411460706623No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5740.1275881614190293No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5710.12692132433844205No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5630.1251430921235427No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5440.12091979061315669No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5160.11469597786100894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)