FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453645
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15130.3335207045156455No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13770.30354131534569984No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13440.29626690473828654No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9040.1992747633061094No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8920.19662952308523185No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7840.17282236109733382No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7350.16202096352875045No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6520.1437247186676807No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6450.14218166187216877No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6300.13887511159607183No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5850.12895546076778097No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5840.12873502408270784No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGG5750.12675109391704967No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5440.11991755667978266No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5370.11837449988427073No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5250.11572925966339317No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5200.11462707623802752No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4740.10448698872466357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)