FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941119

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941119
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453645
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT30570.673874946268558No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19650.4331580861687002No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14450.3185310099306727No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC13590.2995734550143835No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13210.2911968609816046No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11620.2561474280549769No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9640.21250096441049718No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8770.1933229728091349No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7890.17392454452269948No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA6300.13887511159607183No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6100.13446637789460922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6050.13336419446924358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5680.12520803712153777No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5630.12410585369617211No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5480.12079930342007517No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5380.11859493656934388No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5180.11418620286788128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)