FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472797
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13830.2925145464120965No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12420.26269202215750104No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10530.22271714922048996No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5570.11780954616886316No Hit
AGCCGGGGACGGGTAAGAGGTGGTAACCGGGGACGGATAGC5540.1171750243762122No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5360.11336789362030639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)