FastQCFastQC Report
Sun 21 May 2023
EGAF00007941122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490775
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC21670.4415465335438846No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG18300.37287962915796447No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18180.3704345168356171No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG17810.3628954205083796No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15910.3241811420712139No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15850.32295858591004023No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15140.308491671336152No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT14480.2950435535632418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14180.28893077275737356No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12100.24654882583668689No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11880.24206611991238347No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT11220.22861800213947328No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10360.21109469716265092No Hit
CGGTTTGCCCCAACCGGTGCACTGCAGAACACCACCGCAAT9510.19377515154602415No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT9230.1880698894605471No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8880.1809383118537008No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8210.16728643472059498No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8170.16647139727981256No Hit
GCCGCAGTCACCGGTCTGGCAAGAACCACGGCCGGCGCCGT8160.16626763791961693No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT7830.15954357903316183No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC7540.15363455758748917No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7150.14568794253986042No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6940.14140899597575263No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6560.1336661402883195No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6280.12796087820284244No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5430.11064133258621568No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5410.11023381386582447No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG5360.10921501706484642No Hit
CCAACCGGTGCACTGCAGAACACCACCGCAGTCGCCGGTCT5050.10289847689878254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)