FastQCFastQC Report
Sun 21 May 2023
EGAF00007941123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490775
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36470.7431103866333859No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT35890.7312923437420407No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT23780.4845397585451582No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC21700.4421578116244715No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC19330.3938668432581121No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16380.33375783200040754No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16010.32621873567317No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15280.31134430237889055No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC15080.30726911517497835No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13690.27894656410778873No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC11490.23411950486475472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10450.2129285314044114No Hit
CGTCTGGACCGCGGTCAGACTTGGGTGATCAAC10110.2060007131577607No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT9780.1992766542713056No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC9320.18990372370230757No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8890.1811420712138964No Hit
TGGGCTGCGTCCACCCCGATCGGTGGCGGTCGT8300.16912026896235546No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA8100.1650450817584433No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG8050.16402628495746524No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7060.14385410829809994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6810.13876012429320972No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6430.1310172686057766No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5990.12205185675716979No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5480.11166012938719372No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5410.11023381386582447No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC5400.11003005450562886No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCCGT5390.10982629514543324No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5270.10738118282308594No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5270.10738118282308594No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5210.10615862666191228No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5030.10249095817839132No Hit
GGTGGTCGCCGTCTGGATCGTGGTCAGACCTGG4920.10024960521623963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)