FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449305
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13980.31114721625621794No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11420.25417032973147413No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8390.18673284294632822No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7840.1744917149820278No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7190.16002492738785457No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6820.1517899867573252No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6060.1348749735702919No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5870.13064622027353356No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5100.11350864112351297No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT4900.10905732186376738No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGA4760.10594139838194544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)