FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449305
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15100.3360746041107933No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14140.31470827166401444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11650.2592893468801816No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7930.17649480864891331No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7650.17026296168526947No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7370.16403111472162563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5960.1326493139404191No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5850.130201088347559No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGATC5370.11951792212416955No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5160.11484403690143667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5150.11462147093844939No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC4890.1088347559007801No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4600.10238034297414896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)