FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451896
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14360.31777223077876326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11790.26090073822295395No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT8380.18544089790571283No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT7930.17548285446208864No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7260.1606564342238037No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7090.15689450670065677No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6030.13343778214456423No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5320.11772620248906827No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5220.11551330394604067No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5160.11418556482022413No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT4720.10444881123090267No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT4560.10090817356205853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)